Please find attached to this solution the module file for openmpi 1.2, gnu / intel (gnu compilers for C/C++ and intel for fortran 77/90).

 

 

 

 

1- Publish the module (frontend) :

 

sudo ln -s /share/apps/modulefiles.custom/ompi12-ggii /opt/modules/modulefiles/hpc/ompi12-ggii

 

 

2- Propagate the module on the cluster :

 

sudo cluster-fork "ln -s /share/apps/modulefiles.custom/ompi12-ggii /opt/modules/modulefiles/hpc/ompi12-ggii"

 

 

3- Test the module

 

3.1- conflict statement :

 

 

[toor3@frontend ~]$ module list
Currently Loaded Modulefiles:
1) hpc/ompi112-i2 2) pam/pam_default 3) hpc/ompi12-gnu 4) intel/ifort-9.1

 

[toor3@frontend ~]$ module load hpc/ompi12-ggii
hpc/ompi12-ggii(28):ERROR:150: Module 'hpc/ompi12-ggii' conflicts with the currently loaded module(s) 'hpc/ompi12-gnu'
hpc/ompi12-ggii(28):ERROR:102: Tcl command execution failed: conflict hpc/ompi12-gnu hpc/ompi12-ai

------------------------------------------------------

 

------------------------------------------------------
[toor3@frontend ~]$ module list
Currently Loaded Modulefiles:
1) hpc/ompi112-i2 2) pam/pam_default 3) intel/ifort-9.1 4) intel/icc-9.1 5) hpc/ompi12-ai

 

[toor3@frontend ~]$ module load hpc/ompi12-ggii
hpc/ompi12-ggii(28):ERROR:150: Module 'hpc/ompi12-ggii' conflicts with the currently loaded module(s) 'hpc/ompi12-ai'
hpc/ompi12-ggii(28):ERROR:102: Tcl command execution failed: conflict hpc/ompi12-gnu hpc/ompi12-ai

 

 

 

3.2- prereq statement :

 

------------------------------------------------------

[toor3@frontend ~]$ module load hpc/ompi12-ggii
hpc/ompi12-ggii(26):ERROR:151: Module 'hpc/ompi12-ggii' depends on one of the module(s) 'intel/ifort-9.1 '
hpc/ompi12-ggii(26):ERROR:102: Tcl command execution failed: prereq intel/ifort-9.1

------------------------------------------------------

 

------------------------------------------------------

module load intel/ifort-9.1

 

[toor3@frontend ~]$ module load hpc/ompi12-ggii

 

ompi12-ggii module
****************************************************

 

This module sets up the following environment
variables for openmpi 1.2 gnu/intel
PATH
LD_LIBRARY_PATH
MPIHOME
MANPATH

 

Version 3.1.6

 

****************************************************

 

[toor3@frontend ~]$ module list
Currently Loaded Modulefiles:
1) hpc/ompi112-i2 2) pam/pam_default 3) hpc/ompi12-ggii 4) intel/ifort-9.1

 

 

 

3.3- Check the environment setup :

 

3.3.1- PATH :

 

------------------------------------------------------

[toor3@frontend ~]$ echo $PATH
/share/apps/open-mpi/openmpi-1.2-ggii/bin:/share/apps/intel/cce/9.1.047/bin:/share/apps/intel/fce/9.1.041/bin:/opt/lava/6.1/linux2.6-glibc2.3-ia32e/bin:/opt/lava/6.1/linux2.6-glibc2.3-ia32e/etc:/usr/kerberos/bin:/opt/intel/itc60/bin:/opt/intel/ita60/bin:/opt/intel/fce/9.0/bin:/opt/intel/idbe/9.0/bin:/opt/intel/cce/9.0/bin:/share/apps/openmpi-1.1.2-ifort2/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:.:/opt/modules/current/bin/:/opt/modules/bin/:/opt/ganglia/bin:/opt/lam/gnu/bin:/opt/rocks/bin:/opt/rocks/sbin:/home/toor3/bin

------------------------------------------------------

 

3.3.2- LD_LIBRARY_PATH

 

------------------------------------------------------

[toor3@frontend ~]$ echo $LD_LIBRARY_PATH
/share/apps/open-mpi/openmpi-1.2-ggii/lib:/share/apps/open-mpi/openmpi-1.2-ggii/lib/openmpi:/share/apps/intel/fce/9.1.041/lib:/opt/intel/cmkl/8.0/lib/em64t:/opt/lava/6.1/linux2.6-glibc2.3-ia32e/lib:/opt/intel/itc60/slib:/opt/intel/ipp41/em64t/sharedlib:/opt/intel/fce/9.0/lib:/opt/intel/cce/9.0/lib:/share/apps/openmpi-1.1.2-ifort2/lib

------------------------------------------------------

 

3.3.3- MPIHOME

 

------------------------------------------------------

[toor3@frontend ~]$ echo $MPIHOME
/share/apps/open-mpi/openmpi-1.2-ggii
------------------------------------------------------

 

 

3.3.4- MANPATH

 

------------------------------------------------------

[toor3@frontend ~]$ echo $MANPATH
/share/apps/open-mpi/openmpi-1.2-ggii/man:/share/apps/intel/fce/9.1.041/man:/opt/lava/6.1/man:/opt/intel/itc60/man:/opt/intel/fce/9.0/man:/opt/intel/idbe/9.0/man:/opt/intel/cce/9.0/man:/opt/modules/current/man:/opt/modules/man:/share/apps/openmpi-1.1.2-ifort2/man
------------------------------------------------------

 

3.4- Check the mapping (compilers) :

 

------------------------------------------------------

[toor3@frontend ~]$ mpicc -v
Reading specs from /usr/lib/gcc/x86_64-redhat-linux/3.4.5/specs
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-java-awt=gtk --host=x86_64-redhat-linux
Thread model: posix
gcc version 3.4.5 20051201 (Red Hat 3.4.5-2)
[toor3@frontend ~]$ mpiCC -v
Reading specs from /usr/lib/gcc/x86_64-redhat-linux/3.4.5/specs
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --disable-checking --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-java-awt=gtk --host=x86_64-redhat-linux
Thread model: posix
gcc version 3.4.5 20051201 (Red Hat 3.4.5-2)

[toor3@frontend ~]$ mpif77 -V
Intel(R) Fortran Compiler for Intel(R) EM64T-based applications, Version 9.1 Build 20070109 Package ID: l_fc_c_9.1.041
Copyright (C) 1985-2007 Intel Corporation. All rights reserved.

 

[toor3@frontend ~]$ mpif90 -V
Intel(R) Fortran Compiler for Intel(R) EM64T-based applications, Version 9.1 Build 20070109 Package ID: l_fc_c_9.1.041
Copyright (C) 1985-2007 Intel Corporation. All rights reserved.