Submit a job with a YAML file to specify job submission options (bsub -yaml)

Use the bsub -yaml command option to submit a job with a YAML file to specify job submission options.

1. Create a YAML file with the job submission options.

   For more information on the syntax of the key names and values in the YAML file, see bsub -yaml.

   For the following job submission command:

   bsub -r -H -N -Ne -i /tmp/input/jobfile.sh -outdir /tmp/output -C 5 -c 2022:12:12 -cn_mem 256 -hostfile /tmp/myHostFile.txt -q normal -G myUserGroup -u "user@example.com" myjob

   The following YAML file specifies the equivalent job submission command:

   io: 
       inputFile: /tmp/input/jobfile.sh
       outputDir: /tmp/output
   limit: 
       coreLimit: 5
       cpuTimeLimit: 2022:12:12
   resource: 
       computeNodeMem: 256
       hostFile: /tmp/myHostFile.txt
   properties:
       queueName: normal
       rerun: null
   schedule: 
       hold: ""
       userGroup: myUserGroup
   notify: 
       notifyJobDone: ""
       notifyJobExit: 
       mailUser: user@example.com
   command: myjob

2. Use the bsub -yaml command to submit a job with the YAML file that you created.

   bsub -yaml file_name