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Below is the wiki link on a brief introduction of SCOM 2012, quick start guide and configuration to trigger alerts in the target. https://www.ibm.com/developerworks/mydeveloperworks/wikis/home?lang=en#/wiki/Tivoli%20Netcool%20OMNIbus/page/SCOM%202012%20Quick%20Start%20Guide%20and%20Configuration%20to%20Trigger%20Alerts
The SSL communication for both probes Microsoft Operations Manager (MOM) and Microsoft System
Center Operations Manager (SCOM) require the Oracle JRE after resolving few similar issues.
But this excludes the SCOM Probe 2007 R2 which does not use SSL.
Here's the SSL exception shown in %OMNIHOME%\log\nco_p_mom.log:-
2012-05-17T11:09:39: Error: E-JPR-000-000: AxisFault