KrisWH 2700047M9A Visits (634)
The text toolkit can be used to generate Streams code to wrap a Infosphere BigInsights 2.0 Text Analytics extractor, either one described as source AQL modules or as compiled tam modules. The
This can be a useful way to create a starting-point Streams application from a BigInsights Text Analytics extractor. The types and the composite may also be created from a makefile to reduce the work in keeping a streams application in sync with a Text Analytics extractor. This post will describe first how to create Streams types from the extractor, then how to make a composite, and finally, will show how to make an end-to-end application that you can compile and run.
You need to run the following command from the toolkit's bin directory (
The most basic use case for the
create view FullNameWithTitle as extract F.title as title, regex /[A-
There are two fields,
Creating Streams types Let’s assume that you are in the toolkit bin directory, that the
./createTypes.pl --uncompiledModules ~/Fe
(The outputDir parameter is where the compiled .tam file will go when you run the application with Streams. It need not be part of your streams application.) This command compiles and inspects the BigInsights Text Analytics module, and then creates a simple Streams file,
It's not generally a good practice to have all your Streams files in the default namespace. Manually adding a namespace is a minor inconvenience if you are editing by hand, but could be difficult if you're including this command in a makefile that automatically generates the types, so we provide a namespace option. Let’s say you want this in the namespace myaql, in the filename mytypes.spl (if not supplied, it defaults to
./createTypes.pl --uncompiledModules ~/Fe
Now you can reference these types (in this case, the type
Creating a composite It may also be convenient to create a composite that applies the BigInsights Text Analytics Module. To create such a composite, add on the --makecomposite option, with an optional --compositename option.
./createTypes.pl --uncompiledModules ~/Fe
For this example, the output file will be:
namespace myaql; type toPr
Notice that this is the multiPort composite--you can also supply a --singletuplemode argument to build the single tuple mode version. Now you can invoke this composite from your application.
To see an example invocation, supply the
./createTypes.pl --uncompiledModules ~/tr
This creates the Main.spl file in the current directory; you'll have to move it to the right place for your application (in this example
sc -T -M Main -t $STR
Here's how you'd run it on Chapter 1 of Sense and Sensibility, included as sample data in the toolkit.
GabrielaJS 270004FR6S Visits (1489)
When processing data, it is common to perform data enrichment. Enrichment is useful when the data source contains only partial information, but the analytics require additional information that is available only in other data sources. The InfoSphere Streams database toolkit contains two enrichment operators: ODBCEnrich and SolidDBEnrich. These operators require the data used for enrichment to be in a database.
In this post, we illustrate how to develop an SPL composite that serves as a generic file-based enricher. In this solution, we use a FileSource to scan the enrichment data from a file, and then store it in an in-memory map in a Custom operator. This map is keyed by the attributes used to correlate incoming tuples with the enrichment data. If the enrichment data fully fits in memory, this solution can be more efficient than querying the database every time a tuple must be enriched.
The code below shows a sample invocation of the file-based enricher (operator FileEnrich). In this example, the program generates a stream called Data, which has attributes id and city. Data is then consumed by FileEnrich, which outputs an enriched stream using the id attribute as a key. The output stream contains both Data attributes (id and city) and EnrichT attributes (id and name). Note that because EnrichT and Data share the id attribute, id appears only once in the EnrichedData stream. The FileEnrich operator receives the following parameters:
We now show the code for the generic FileEnrich composite operator. This composite is developed using 2 primitive operators and 1 Custom operator. The first operator is a FileSource (line 11). The FileSource uses the enrichmentFile parameter and produces a stream of type enrichmentType. Using a parameter to establish the type of the FileSource output stream gives users the option to use a CSV file with any set of attributes. The second operator is a Switch (line 16), which serves exclusively to control when the input stream (In) can start flowing into the downstream operator. By default, this operator has an initial status of false (i.e., blocking tuples). The status parameter indicates the action taken once a tuple arrives in the second input stream. In this case, a true value indicates that the switch will open when a tuple arrives. The third operator (lines 21-22), implemented as a Custom, is the one responsible for doing the data enrichment itself.
The Custom operator has two phases of execution. First, it builds a map based on EnrichmentData, the stream generated by the FileSource. To create this map, this operator uses the enrichmentKeyType and the enrichmentType itself (line 25). To populate the map, the operator uses the function getT
The C++ code below shows the implementation of this function. This function returns an error flag in two cases: (i) if the attribute provided as a string does not exist, and (ii) if the attribute type does not match the type of value.
The second stage of execution happens after the stream produced by the FileSource is fully processed, which is indicated by a final punctuation. At this point, the Custom operator notifies the Switch (line 38), and the data enrichment process starts. For enrichment, the Custom operator merges the attributes of Data and EnrichmentData using the assignFrom function (lines 45-46). This function assigns all matching fields from one tuple to the other, so be careful when naming the attributes of the enrichment type. If attribute names overlap, the last assigned value will prevail, which in this case is the value available in the enrichment tuple (line 46).
In summary, the FileEnrich composite has three characteristics that make it generic:
Thanks to Bugra Gedik for this example!
scott.s 2700060BQD Visits (1078)
In a previous post, we discussed composites and the kinds of genericity they can have. A kind of genericity we did not cover is operator genericity, which is when at least one operator in a composite's stream graph is passed in as a parameter.
Building on the example code from composite genericity, suppose we have the following application:
The purpose of this application is to find "suspect" remote hosts in a log file, where we define a suspect as any remote host from which 10 or more failed login attempts have originated. The steps the application takes to do this are:
One problem with our application as it is written is that it assumes the source and the sink will always be on the filesystem. It's easy to imagine wanting to perform this operation on data sources that come from the network, and wanting to report the results over the network. However, we don't want to write another version of this composite that just has a different source and sink.
The solution to our problem is operator parameters:
Now, the FindSuspects composite is operator generic in its source and sink. However, we have one problem: most source and sink adapters require parameters to configure where they should send or receive data from. There is no way to make these parameters fully generic. Of course, if we have, say, a file name parameter, we can always parameterize the value to that parameter. But we cannot parameterize the parameter itself.
Wrapping operator invocations in a composite solves this problem. Given the above definition of FindSuspects, we could invoke it with:
The composite Find
When FindSuspectsFromTCP is used as the main composite for an application,
then it retrieves log data from logs.company.com on port 514, and sends
suspects to susp
GabrielaJS 270004FR6S Visits (1549)
Native functions are a convenient way to expose a function implemented in a native language to code written directly in SPL. Such code can be used in a Custom operator, SPL functions, or primitive operators that allow custom logic. In InfoSphere Streams 3.0.0, native functions must be implemented or wrapped in C++ (e.g., using a library with C/C++ bindings). The C++ implementation is then compiled into a shared library, which is linked to an SPL program at compile time.
When writing native functions, one might want to use a complex SPL tuple type as a return value. In its current version, the SPL compiler does not allow a native function to return a tuple type. This is because native functions are compiled into a shared library, separately from the SPL program. When compiling a shared library, developers do not have access to specific SPL tuple types, which are only generated when compiling an SPL program. Even if one forces the compiler to generate an SPL tuple type before compiling the shared library, the SPL compiler does not guarantee that the generated tuple types will not change or move. As a result, shared libraries can only access tuples via their base class SPL::Tuple, which is not a concrete type. This means that one cannot use an SPL::Tuple when concrete types are needed in C++, such as in the return of a method or in STL containers.
A trick to overcome this limitation is to pass a mutable SPL::Tuple reference as a native function parameter and then use the reflective API to access tuple attributes. A mutable parameter in SPL is equivalent to a non-const reference parameter in the C++ API.
The following code shows an example of a Custom operator that uses a native function named populateTuple (line 19) to fill up a tuple of type tuple<int32 anInt, list<int32> anIntList> (line 14).
The following segment shows the function prototype definition in the function model for the shared library.
Note that the function signature indicates a mutable tuple of a specific type. This indicates to the SPL compiler that this function can only be invoked with tuples of the specified type.
On the C++ side, the method implementation must receive the generic SPL::Tuple type. A sample C++ implementation of the populateTuple method is shown below.
The SPL reflective APIs can also help when one needs to use native functions to populate an SPL collection that contains tuples. The example below shows an example SPL invocation of a native function that receives a map as a parameter (line 21).
The segment below shows the function prototype declaration in the function model.
In C++, the method declaration has the SPL::Map generic type, which can be inspected via the reflection API.
Always keep in mind that using the reflective API to access SPL types has a greater runtime cost than using generated types. However, unlike generated types, the reflective API is always available.
[Update: On 02/15/2013, we improved the example on passing collections to a native function. Thanks to Bugra Gedik!]
scott.s 2700060BQD Visits (1600)
In a previous post, we looked at the practice of wrapping Custom operators in composites. We observed that the result was not generic:
Technically, however, the above code does have some type genericity, just not much. We will explore what that genericity is in a moment, but first let's go over the kinds of genericity there are in SPL, and which ones can apply to a composite operator.
Operators that can handle any number of input and output ports are port number generic. Composites cannot be port number generic; composites must define the exact number of input and output ports they provide. Primitive operators, however, can be port number generic. In our example, ParseMessages defines one input and one output port.
Composites can be type generic, which means that they can handle streams of any type. ParseMessages is not type generic, because the type of the stream Out is fully specified to have the type ServiceMessage.
The type for In, however, is partially type generic. The type is not fully specified, although we have made one assumption about it: that it contains an attribute named raw that is of type rstring. In the example application we previously developed, that attribute was the only attribute in the stream type, but that does not need to be true in general. For example, we could invoke ParseMessages in this way:
Even though ParseMessages does not know about the attributes processedTime and networkName, it can still handle the type AugmentedRawMessage on its input stream because it has an rstring attribute named raw.
However, we can still make ParseMessages attribute generic. We can do this by modifying the composite to take an attribute as a parameter:
Composites that take attributes as parameters are attribute generic because they make no assumptions about an attribute's name. The type of the attribute, however, cannot be generic. In the above version of ParseMessages, the attribute we provide upon invocation must have type rstring, like this example:
If we tried to provide an attribute that was not an rstring (such as processedTime), the compiler would raise an error the first time it tried to use the inappropriately typed attribute.
Using a similar idea, we can still make ParseMessages even more generic. While we want to ensure that the output stream has the specific attributes date, hostname, service and message, there is no reason for us to *limit* the output stream's type to those attributes. However, because we fully specified the type name, we have forced that to be the case. We can remove that restriction by not fully specifying the type:
Note that we can no longer create a tuple literal of our output tuple type - creating a tuple literal requires knowing the full type of a tuple, but we want to remain partially type generic. To do so, we only require the out the output's stream type contains date, hostname, service, message and that they are type rstring. We invoke this composite in this way:
The remaining kind of genericity is operator genericity, which is possible when a composite takes an operator as its parameter. We will cover operator genericity in a future post.
scott.s 2700060BQD Visits (1599)
Some operators can be implemented directly in SPL using Custom operators, rather than defining them as native operators in C++ or Java. Implementing logic using Custom operators is typically suitable for operations that do not need to call out to pre-existing libraries, and whose logic operates on, and can be fully expressed with, SPL data types. Writing Custom operators requires less code and simplifies development as there is no need to switch to another language and write an operator model.
For example, consider parsing system messages from /var/log/messages on a Linux system. A typical example looks like the following:
While there is no formal grammar, the structure of a message is:
We would like to write an SPL operator that parses such messages. The input tuples will contain a single string, which contains a single message. The output will be a tuple where each entry in our informal grammar above is its own string attribute:
Our example application reads messages directly from /var/log/messages, line by line. To parse these messages, we separate the raw line into tokens separated by spaces. From there, we can associate indices with attributes. For the date attribute, we know that entries 0, 1 and 2 are part of the date, so we combine them (effectively un-tokenizing them). The message itself can have any number of tokens separate by spaces, but we know that it must start at index 5.
Implementing this logic directly in SPL with a Custom operator is easier than dropping down to C++ or Java. However, as written, there is a problem: we cannot reuse this operator. If we wanted to parse messages in the same way in this or in another application, we would need to copy this code. It exists only inside of this Custom operator; there is no way to "name" this custom logic.
Wrapping Custom operators in composites solves this problem. By making a Custom operator invocation the only part of a composite's stream graph, we can use the composite operator as a way to "name" that logic. For example:
Note that the ParseMessages composite knows about the ServiceMessage type. Because of this fact, our composite is not type generic. In future posts, we will explore the various kinds of genericity available to composites.
We can now use ParseMessages in our application:
The operator ParseMessages can now be reused elsewhere in the application, and we can place it in toolkits so that other applications can make use of it.
GabrielaJS 270004FR6S Visits (1651)
A new feature of InfoSphere Streams 3.0 allows dynamic filter expressions for applications that use
A recurring application sharing scenario is when different consuming applications are interested in processing different subsets of the exported stream. Prior to Streams 3.0, the importing application would receive all tuples available in the exported stream. This would result in waste of network resources, as the whole stream was transmitted but a filtering operation on the consuming application side would immediately discard many tuples. In a scenario where there are many different consumers, transferring the full stream multiple times wastes a significant amount of resources.
To reduce network transfers, developers can take advantage of dynamic filter expressions in Import operators. During application instantiation, the filtering expression is effectively shipped to the Export operator side. During runtime, the Export operator evaluates the filtering expression to decide which tuples should be transmitted to the consuming application.
The following figures show some SPL code using this new feature. All examples use a stream of type Schema declared as "int64 streamSubset, rstring stringSubset, uint32 random".
The segment below shows an Export operator that exports the stream produced by a Custom operator, which consumes a stream produced by a FileSource operator. In this example, the Custom operator forwards downstream all incoming tuples without doing any specific transformation. In reality, developers may substitute this operator with any arbitrary SPL topology. The invocation of the Export operator does not need to change from prior versions of Streams.
The file "sample.dat" has the following 10 lines:
In the Import side, one must now use the filter parameter, as in the example below. This instance of the Import operator receives only tuples where the streamSubset attribute has value 1 and the stringSubset attribute has value “streams”. This filtered, imported stream is processed by a Custom operator, which then sends the output directly to a FileSink. As in the example above, the Custom operator just illustrates a sample topology. The filter parameter in Import allows the construction of more complex expressions, similar to the subscription parameter.
The figure below shows the Streams instance graph when running the applications above. To illustrate the power of the dynamic filter expressions, we also run two other applications. The applications are similar to the importer application above, but use the following filtering expressions:stringSubset == "sources" || stringSubset == "sinks"
streamSubset == 2 && stringSubset == "operator"
As highlighted by the red rectangle, the Custom operator of one of the importing applications (right side) receives only 2 out of the 10 tuples submitted to the Export operator (10 lines in ‘sample.dat’). The filtering for the “streams” keyword allows 4 tuples to be transmitted and the filtering for “sources” or “sinks” keywords allows 3 tuples to be transmitted. The total number of tuples transmitted by the Export operator using filtering is 9, while a configuration without filtering would transfer 30 tuples.
Summary: When the application consumes only a subset of the tuples of an exported stream, use the filter parameter of the Import operator to save network resources.